DMRcate - Methylation array and sequencing spatial analysis methods
De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.
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differentialmethylationgeneexpressionmicroarraymethylationarraygeneticsdifferentialexpressiongenomeannotationdnamethylationonechanneltwochannelmultiplecomparisonqualitycontroltimecoursesequencingwholegenomeepigeneticscoveragepreprocessingdataimport
6.33 score 3 dependents 563 scripts 2.1k downloadsconsensus - Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.
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qualitycontrolregressiondatarepresentationgeneexpressionmicroarrayrnaseq
4.70 score 10 scripts 382 downloadsDMRcatedata - Data Package for DMRcate
This package contains 9 data objects supporting functionality and examples of the Bioconductor package DMRcate.
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experimenthubexperimentdatasnpdatahomo_sapiens_datamus_musculus_datasequencingdatamicroarraydatagenomedatapkg
3.38 score 12 scripts